STRI Coral Reef

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Bibliography

Sean McMahon

2019
Albert, Loren P., Restrepo-Coupe, Natalia, Smith, Marielle N., Wu, Jin, Chavana-Bryant, Cecilia, Prohaska, Neill, Taylor, Tyeen C., Martins, Giordane A., Ciais, Philippe, Mao, Jiafu, Arain, M. A., Li, Wei, Shi, Xiaoying, Ricciuto, Daniel M., Huxman, Travis E., McMahon, Sean M., and Saleska, Scott R. 2019. "Cryptic phenology in plants: case studies, implications and recommendations." Global Change Biology https://doi.org/10.1111/gcb.14759
Briscoe, Natalie J., Elith, Jane, Salguero-Gómez, Roberto, Lahoz-Monfort, Jos, Camac, James S., Giljohann, Katherine M., Holden, Matthew H., Hradsky, Bronwyn A., Kearney, Michael R., McMahon, Sean M., Phillips, Ben L., Regan, Tracey J., Rhodes, Jonathan R., Vesk, Peter A., Wintle, Brendan A., Yen, Jian D. L., and Guillera-Arroita, Gurutzeta. 2019. "Forecasting species range dynamics with process-explicit models: matching methods to applications." Ecology Letters https://doi.org/10.1111/ele.13348
Hogan, J. Aaron, McMahon, Sean M., Buzzard, Vanessa, Michaletz, Sean T., Enquist, Brian J., Thompson, Jill, Swenson, Nathan G., and Zimmerman, Jess K. 2019. "Drought and the interannual variability of stem growth in an aseasonal, everwet forest." Biotropica 51 (2):139–154. https://doi.org/10.1111/btp.12624
McMahon, Sean M., Arellano, Gabriel, and Davies, Stuart J. 2019. "The importance and challenges of detecting changes in forest mortality rates." Ecosphere 10 (2):1–10. https://doi.org/10.1002/ecs2.2615
Menge, Duncan N. L., Chisholm, Ryan A., Davies, Stuart J., Salim, Kamariah Abu, Allen, David, Alvarez, Mauricio, Bourg, Norm, Brockelman, Warren Y., Bunyavejchewin, Sarayudh, Butt, Nathalie, Cao, Min, Chanthorn, Wirong, Chao, Wei-Chun, Clay, Keith, Condit, Richard S., Cordell, Susan, Silva, João Batista da, Dattaraja, H. S., Andrade, Ana Cristina Segalin de, Oliveira, Alexandre A. de, Ouden, Jan den, Drescher, Michael, Fletcher, Christine, Giardina, Christian P., Gunatilleke, C. V. S. et al. 2019. "Patterns of nitrogen-fixing tree abundance in forests across Asia and America." Journal of Ecology 1–13. https://doi.org/10.1111/1365-2745.13199
Smith, Marielle N., Stark, Scott C., Taylor, Tyeen C., Ferreira, Mauricio L., Oliveira, Eronaldo de, Restrepo-Coupe, Natalia, Chen, Shuli, Woodcock, Tara, dos Santos, Darlisson Bentes, Alves, Luciana F., Figueira, Michela, de Camargo, Plinio B., de Oliveira, Raimundo C., Aragão, Luiz E. O. C., Falk, Donald A., McMahon, Sean M., Huxman, Travis E., and Saleska, Scott R. 2019. "Seasonal and drought related changes in leaf area profiles depend on height and light environment in an Amazon forest." New Phytologist 222 (3):1284–1297. https://doi.org/10.1111/nph.15726
2018
Chitra-Tarak, Rutuja, Ruiz, Laurent, Dattaraja, Handanakere S., Kumar, M. S. Mohan, Riotte, Jean, Suresh, Hebbalalu S., McMahon, Sean M., and Sukumar, Raman. 2018. "The roots of the drought: Hydrology and water uptake strategies mediate forest-wide demographic response to precipitation." Journal of Ecology 106 (4):1495–1507. https://doi.org/10.1111/1365-2745.12925
Johnson, Daniel J., Needham, Jessica, Xu, Chonggang, Massoud, Elias C., Davies, Stuart J., Anderson-Teixeira, Kristina J., Bunyavejchewin, Sarayudh, Chambers, Jeffery Q., Chang-Yang, Chia-Hao, Chiang, Jyh-Min, Chuyong, George B., Condit, Richard S., Cordell, Susan, Fletcher, Christine, Giardina, Christian P., Giambelluca, Thomas W., Gunatilleke, Nimal, Gunatilleke, Savitri, Hsieh, Chang-Fu, Hubbell, Stephen, Inman-Narahari, Faith, Kassim, Abdul Rahman, Katabuchi, Masatoshi, Kenfack, David, Litton, Creighton M. et al. 2018. "Climate sensitive size-dependent survival in tropical trees." Nature Ecology & Evolution 2 (9):1436–1442. https://doi.org/10.1038/s41559-018-0626-z
LaManna, Joseph A., Mangan, Scott A., Alonso, Alfonso, Bourg, Norman A., Brockelman, Warren Y., Bunyavejchewin, Sarayudh, Chang, Li-Wan, Chiang, Jyh-Min, Chuyong, George B., Clay, Keith, Cordell, Susan, Davies, Stuart J., Furniss, Tucker J., Giardina, Christian P., Gunatilleke, I. A. U. Nimal, Gunatilleke, C. V. Savitri, He, Fangliang, Howe, Robert W., Hubbell, Stephen P., Hsieh, Chang-Fu, Inman-Narahari, Faith M., Janik, David, Johnson, Daniel J., Kenfack, David, Korte, Lisa et al. 2018. "Response to Comment on "Plant diversity increases with the strength of negative density dependence at the global scale"." Science 360 (6391):https://doi.org/10.1126/science.aar5245
LaManna, Joseph A., Mangan, Scott A., Alonso, Alfonso, Bourg, Norman A., Brockelman, Warren Y., Bunyavejchewin, Sarayudh, Chang, Li-Wan, Chiang, Jyh-Min, Chuyong, George B., Clay, Keith, Cordell, Susan, Davies, Stuart J., Furniss, Tucker J., Giardina, Christian P., Gunatilleke, I. A. U. Nimal, Gunatilleke, C. V. Savitri, He, Fangliang, Howe, Robert W., Hubbell, Stephen P., Hsieh, Chang-Fu, Inman-Narahari, Faith M., Janik, David, Johnson, Daniel J., Kenfack, David, Korte, Lisa et al. 2018. "Response to Comment on "Plant diversity increases with the strength of negative density dependence at the global scale"." Science 360 (6391):aar3824–aar3824. https://doi.org/10.1126/science.aar3824
Lutz, James A., Furniss, Tucker J., Johnson, Daniel J., Davies, Stuart J., Allen, David, Alonso, Alfonso, Anderson-Teixeira, Kristina J., Andrade, Ana, Baltzer, Jennifer, Becker, Kendall M. L., Blomdahl, Erika M., Bourg, Norman A., Bunyavejchewin, Sarayudh, Burslem, David F. R. P., Cansler, C. Alina, Cao, Ke, Cao, Min, Cardenas, Dairon, Chang, Li-Wan, Chao, Kuo-Jung, Chao, Wei-Chun, Chiang, Jyh-Min, Chu, Chengjin, Chuyong, George B., Clay, Keith et al. 2018. "Global importance of large-diameter trees." Global Ecology and Biogeography 27 (7):849–864. https://doi.org/10.1111/geb.12747
McDowell, Nate, Allen, Craig D., Anderson-Teixeira, Kristina, Brando, Paulo, Brienen, Roel, Chambers, Jeff, Christoffersen, Brad, Davies, Stuart, Doughty, Chris, Duque, Alvaro, Espirito-Santo, Fernando, Fisher, Rosie, Fontes, Clarissa G., Galbraith, David, Goodsman, Devin, Grossiord, Charlotte, Hartmann, Henrik, Holm, Jennifer, Johnson, Daniel J., Kassim, Abd Rahman, Keller, Michael, Koven, Charlie, Kueppers, Lara, Kumagai, Tomo'omi, Malhi, Yadvinder et al. 2018. "Drivers and mechanisms of tree mortality in moist tropical forests." New Phytologist 219 (3):851–869. https://doi.org/10.1111/nph.15027
Needham, Jessica, Merow, Cory, Chang-Yang, Chia, Caswell, Hal, and McMahon, Sean M. 2018. "Inferring forest fate from demographic data: from vital rates to population dynamic models." Proceedings.Biological Sciences 285 (1874):https://doi.org/10.1098/rspb.2017.2050
Sedio, Brian E., Parker, John D., McMahon, Sean M., and Wright, S. Joseph. 2018. "Comparative metabolomics of forest communities: Species differences in foliar chemistry are greater in the tropics." bioRxiv 271361. https://doi.org/10.1101/271361
Sedio, Brian E., Parker, John D., McMahon, Sean M., and Wright, S. Joseph. 2018. "Comparative foliar metabolomics of a tropical and a temperate forest community." Ecology 99 (12):2647–2653. https://doi.org/10.1002/ecy.2533
Taylor, Tyeen C., McMahon, Sean M., Smith, Marielle N., Boyle, Brad, Violle, Cyrille, van Haren, Joost, Simova, Irena, Meir, Patrick, Ferreira, Leandro V., de Camargo, Plinio B., da Costa, Antonio C. L., Enquist, Brian J., and Saleska, Scott R. 2018. "Isoprene emission structures tropical tree biogeography and community assembly responses to climate." New Phytologist 220 (2):435–446. https://doi.org/10.1111/nph.15304
2017
LaManna, Joseph A., Mangan, Scott A., Alonso, Alfonso, Bourg, Norman A., Brockelman, Warren Y., Bunyavejchewin, Sarayudh, Chang, Li-Wan, Chiang, Jyh-Min, Chuyong, George B., Clay, Keith, Condit, Richard S., Cordell, Susan, Davies, Stuart J., Furniss, Tucker J., Giardina, Christian P., Gunatilleke, I. A. U. Nimal, Gunatilleke, C. V. Savitri, He, Fangliang, Howe, Robert W., Hubbell, Stephen P., Hsieh, Chang-Fu, Inman-Narahari, Faith M., Janik, David, Johnson, Daniel J., Kenfack, David et al. 2017. "Plant diversity increases with the strength of negative density dependence at the global scale." Science 356 (6345):1389–1392. https://doi.org/10.1126/science.aam5678
McMahon, Sean M. 2017. "Temperature Forests: A Tale of the Anthropocene." in Living in the anthropocene : Earth in the age of humans, edited by Kress, W. John and Stine, Jeffrey K., 53–57. Washington, DC: Smithsonian Books.
2016
Evans, Margaret, Merow, Cory, Record, Sydne, McMahon, Sean M., and Enquist, Brian J. 2016. "Towards Process-based Range Modeling of Many Species." Trends in Ecology & Evolution 31 (11):860–871. https://doi.org/10.1016/j.tree.2016.08.005
Griffith, Alden B., Salguero-Gómez, Roberto, Merow, Cory, and McMahon, Sean. 2016. "Demography beyond the population." Journal of Ecology 104 (2):271–280. https://doi.org/10.1111/1365-2745.12547
Herrmann, Valentine, McMahon, Sean M., Detto, Matteo, Lutz, James A., Davies, Stuart J., Chang-Yang, Chia-Hao, and Anderson-Teixeira, Kristina J. 2016. [Dataset] "Tree circumference dynamics over short time scales using automated dendrometer bands in four forests." Distributed by ​Smithsonian Tropical Research Institute. https://doi.org/10.5479/data_serc/10088/30918
Herrmann, Valentine, McMahon, Sean M., Detto, Matteo, Lutz, James A., Davies, Stuart James, Chang-Yang, Chia, and Anderson-Teixeira, Kristina J. 2016. "Tree Circumference Dynamics in Four Forests Characterized Using Automated Dendrometer Bands." Plos One 11 (12):1–20. https://doi.org/10.1371/journal.pone.0169020
Janík, David, Král, Kamil, Adam, Dusan, Hort, Libor, Samonil, Pavel, Unar, Pavel, Vrska, Tomás, and McMahon, Sean. 2016. "Tree spatial patterns of Fagus sylvatica expansion over 37 years." Forest Ecology and Management 375:134–145. https://doi.org/10.1016/j.foreco.2016.05.017
Král, Kamil, Shue, Jessica, Vrška, Tomáš, Gonzalez-Akre, Erika, Parker, Geoffrey G., McShea, William J., and McMahon, Sean M. 2016. "Fine-scale patch mosaic of developmental stages in Northeast American secondary temperate forests: the European perspective." European Journal of Forest Research 135 (5):981–996. https://doi.org/10.1007/s10342-016-0988-1
Needham, Jessica, Merow, Cory, Butt, Nathalie, Malhi, Yadvinder, Marthews, Toby R., Morecroft, Michael, and McMahon, Sean M. 2016. "Forest community response to invasive pathogens: the case of ash dieback in a British woodland." Journal of Ecology 104 (2):315–330. https://doi.org/10.1111/1365-2745.12545
2015
Anderson-Teixeira, Kristina J., Davies, Stuart James, Bennett, Amy C., Gonzalez-Akre, Erika, Muller-Landau, Helene C., Wright, S. Joseph, Abu Salim, Kamariah, Almeyda Zambrano, Angélica M., Alonso, Alfonso, Baltzer, Jennifer L., Basset, Yves, Bourg, Norman A., Broadbent, Eben N., Brockelman, Warren Y., Bunyavejchewin, Sarayudh, Burslem, David F. R. P., Butt, Nathalie, Cao, Min, Cardenas, Dairon, Chuyong, George B., Clay, Keith, Cordell, Susan, Dattaraja, Handanakere S., Deng, Xiaobao, Detto, Matteo et al. 2015. "CTFS-ForestGEO: a worldwide network monitoring forests in an era of global change." Global Change Biology 21 (2):528–549. https://doi.org/10.1111/gcb.12712
Anderson-Teixeira, Kristina J., McGarvey, Jennifer C., Muller-Landau, Helene C., Park, Janice Y., Gonzalez-Akre, Erika, Herrmann, Valentine, Bennett, Amy C., So, Christopher V., Bourg, Norman A., Thompson, Jonathan R., McMahon, Sean M., and McShea, William J. 2015. "Size-related scaling of tree form and function in a mixed-age forest." Functional Ecology 29 (12):1587–1602. https://doi.org/10.1111/1365-2435.12470
McMahon, Sean M., Bebber, Daniel P., Butt, Nathalie, Crockatt, Martha, Kirby, Keith, Parker, Geoffrey G., Riutta, Terhi, and Slade, Eleanor M. 2015. "Ground based LiDAR demonstrates the legacy of management history to canopy structure and composition across a fragmented temperate woodland." Forest Ecology and Management 335:255–260. https://doi.org/10.1016/j.foreco.2014.08.039
McMahon, Sean M. and Parker, Geoffrey G. 2015. "A general model of intra-annual tree growth using dendrometer bands." Ecology and Evolution 5 (2):243–254. https://doi.org/10.1002/ece3.1117
Metcalf, C. Jessica E., Ellner, Stephen P., Childs, Dylan Z., Salguero-Gómez, Roberto, Merow, Cory, McMahon, Sean M., Jongejans, Eelke, and Rees, Mark. 2015. "Statistical modelling of annual variation for inference on stochastic population dynamics using Integral Projection Models." Methods in Ecology and Evolution 6 (9):1007–1017. https://doi.org/10.1111/2041-210X.12405
Sexton, Joseph O., Noojipady, Praveen, Anand, Anupam, Song, Xiao-Peng, McMahon, Sean M., Huang, Chengquan, Feng, Min, Channan, Saurabh, and Townshend, John R. 2015. "A model for the propagation of uncertainty from continuous estimates of tree cover to categorical forest cover and change." Remote Sensing of Environment 156:418–425. https://doi.org/10.1016/j.rse.2014.08.038
Visser, Marco D., McMahon, Sean M., Merow, Cory, Dixon, Philip M., Record, Sydne, and Jongejans, Eelke. 2015. "Speeding Up Ecological and Evolutionary Computations in R; Essentials of High Performance Computing for Biologists." PLoS computational biology 11 (3):1–11. https://doi.org/10.1371/journal.pcbi.1004140
2014
Kral, Kamil, McMahon, Sean M., Janik, David, Adam, Dusan, and Vrska, Tomas. 2014. "Patch mosaic of developmental stages in central European natural forests along vegetation gradient." Forest Ecology and Management 330:17–28. https://doi.org/10.1016/j.foreco.2014.06.034
Merow, Cory, Dahlgren, Johan P., Metcalf, C. J., Childs, Dylan Z., Evans, Margaret E. K., Jongejans, Eelke, Record, Sydne, Rees, Mark, Salguero-Gómez, Roberto, and McMahon, Sean M. 2014. "Advancing population ecology with integral projection models: a practical guide." Methods in Ecology and Evolution 5 (2):99–110. https://doi.org/10.1111/2041-210X.12146
Merow, Cory, Latimer, Andrew M., Wilson, Adam M., McMahon, Sean M., Rebelo, Anthony G., and Silander, John A., Jr. 2014. "On using integral projection models to generate demographically driven predictions of species' distributions: development and validation using sparse data." Ecography 37 (12):1167–1183. https://doi.org/10.1111/ecog.00839
Merow, Cory, Smith, Mathew J., Edwards, Thomas C., Guisan, Antoine, McMahon, Sean M., Normand, Signe, Thuiller, Wilfried, Wüest, Rafael O., Zimmermann, Niklaus E., and Elith, Jane. 2014. "What do we gain from simplicity versus complexity in species distribution models?." Ecography 37 (12):1267–1281. https://doi.org/10.1111/ecog.00845
Réjou-Méchain, M., Muller-Landau, Helene C., Detto, Matteo, Thomas, S. C., Le Toan, T., Saatchi, S. S., Barreto-Silva, J., Bourg, N. A., Bunyavejchewin, S., Butt, N., Brockelman, W. Y., Cao, M., Cárdenas, D., Chiang, J. M., Chuyong, G. B., Clay, K., Condit, Richard S., Dattaraja, H. S., Davies, Stuart James, Duque, A., Esufali, S., Ewango, C., Fernando, R. H. S., Fletcher, C. D., Gunatilleke, I. A. U. N. et al. 2014. "Local spatial structure of forest biomass and its consequences for remote sensing of carbon stocks." Biogeosciences Discussions 11 (4):5711–5742. https://doi.org/10.5194/bgd-11-5711-2014
2013
Chisholm, Ryan A., Muller-Landau, Helene C., Abdul Rahman, Kassim, Bebber, Daniel P., Bin, Yue, Bohlman, Stephanie A., Bourg, Norman A., Brinks, Joshua, Bunyavejchewin, Sarayudh, Butt, Nathalie, Cao, Honglin, Cao, Min, Cárdenas, Dairon, Chang, Li-Wan, Chiang, Jyh-Min, Chuyong, George, Condit, Richard S., Dattaraja, Handanakere S., Chang, Li-Wan, Duque, Alvaro, Fletcher, Christine, Gunatilleke, Nimal, Gunatilleke, Savitri, Hao, Zhanqing, Harrison, Rhett D. et al. 2013. "Scale-dependent relationships between tree species richness and ecosystem function in forests." Journal of Ecology 101 (5):1214–1224. https://doi.org/10.1111/1365-2745.12132
Metcalf, C. Jessica E., McMahon, Sean M., Salguero-Gómez, Roberto, and Jongejans, Eelke. 2013. "IPMpack: an R package for integral projection models." Methods in Ecology and Evolution 4 (2):195–200. https://doi.org/10.1111/2041-210x.12001
2012
Stark, Scott C., Leitold, Veronika, Wu, Jin L., Hunter, Maria O., de Castilho, Carolina V., Costa, Flávia R. C., McMahon, Sean M., Parker, Geoffrey G., Shimabukuro, Mô, Lefsky, Michael A., Keller, Michael, Alves, Luciana F., Schietti, Juliana, Shimabukuro, Yosio Edemir, Brandão, Diego O., Woodcock, Tara K., Higuchi, Niro, de Camargo, Plinio B., de Oliveira, Raimundo C., and Saleska, Scott R. 2012. "Amazon forest carbon dynamics predicted by profiles of canopy leaf area and light environment." Ecology Letters 15 (12):1406–1414. https://doi.org/10.1111/j.1461-0248.2012.01864.x
2011
Makana, Jean-Remy, Ewango, Corneille N., McMahon, Sean M., Thomas, Sean C., Hart, Terese B., and Condit, Richard S. 2011. "Demography and biomass change in monodominant and mixed old-growth forest of the Congo." Journal of Tropical Ecology 27:447–461. https://doi.org/10.1017/S0266467411000265
McMahon, Sean M., Harrison, Sandy P., Armbruster, W. Scott, Bartlein, Patrick J., Beale, Colin M., Edwards, Mary E., Kattge, Jens, Midgley, Guy, Morin, Xavier, and Prentice, I. Colin. 2011. "Improving assessment and modelling of climate change impacts on global terrestrial biodiversity." Trends in Ecology & Evolution 26 (5):249–259. https://doi.org/10.1016/j.tree.2011.02.012
McMahon, Sean M., Metcalf, Charlotte J. E., and Woodall, Christopher W. 2011. "High-Dimensional Coexistence of Temperate Tree Species: Functional Traits, Demographic Rates, Life-History Stages, and Their Physical Context." PLoS ONE 6 (1):e16253.
2010
Canning-Clode, João, Maloney, Kelly O., McMahon, Sean M., and Wahl, Martin. 2010. "Expanded view of the local-regional richness relationship by incorporating functional richness and time: a large-scale perspective." Global Ecology and Biogeography 19 (6):875–885. https://doi.org/10.1111/j.1466-8238.2010.00560.x
Clark, James S., Bell, David, Chu, Chengjin, Courbaud, Benoit, Dietze, Michael, Hersh, Michelle, HilleRisLambers, Janneke, Ibáñez, Inés, LaDeau, Shannon, McMahon, Sean M., Metcalf, Jessica, Mohan, Jacqueline, Moran, Emily, Pangle, Luke, Pearson, Scott, Salk, Carl, Shen, Zehao, Valle, Denis, and Wyckoff, Peter. 2010. "High-dimensional coexistence based on individual variation: a synthesis of evidence." Ecological Monographs 80 (4):569–608. https://doi.org/10.1890/09-1541.1
McMahon, Sean M., Parker, Geoffrey G., and Miller, Dawn R. 2010. "Reply to Foster et al.: Using a forest to measure trees: Determining which vital rates are responding to climate change." Proceedings of the National Academy of Sciences of the United States of America 107 (21):E88–E89; E88-E89.
McMahon, Sean M., Parker, Geoffrey G., and Miller, Dawn R. 2010. "Evidence for a recent increase in forest growth." Proceedings of the National Academy of Sciences of the United States of America 107 (8):3611–3615. https://doi.org/10.1073/pnas.0912376107
2009
McMahon, Sean M., Dietze, Michael,C., Hersh, Michelle,H., Moran, Emily V., and Clark, James S. 2009. "A Predictive Framework to Understand Forest Responses to Global Change." Annals of the New York Academy of Sciences 1162:221–236.
Metcalf, C. Jessica E., McMahon, Sean M., and Clark, James S. 2009. "Overcoming data sparseness and parametric constraints in modeling of tree mortality: a new nonparametric Bayesian model." Canadian Journal of Forest Research-Revue Canadienne De Recherche Forestiere 39 (9):1677–1687. https://doi.org/10.1139/X09-083
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