Bibliography
Sean Connolly
Lazarus, Mai, Kimmerling, Naama, Gurevich, Tamara, Kiflawi, Moshe, Connolly, Sean R., Holzman, Roi, and Belmaker, Jonathan. 2025. "Post‐Larval Processes Reduce the Diversity of Coral Reef Fish Communities." Ecology Letters, 28, (2). https://doi.org/10.1111/ele.70058.
Zamborain‐Mason, Jessica, Connolly, Sean R., MacNeil, M. A., Barnes, Michele L., Bauman, Andrew G., Feary, David A., Huertas, Victor, Januchowski‐Hartley, Fraser A., Lau, Jacqueline D., Mihalitsis, Michalis, and Cinner, Joshua E. 2025. "Downscaling global reference points to assess the sustainability of local fisheries." Conservation Biology, https://doi.org/10.1111/cobi.14440.
Figueiredo, Joana, Baird, Andrew H., Harii, Saki, and Connolly, Sean R. 2024. "Predicting demography from species traits: larval development time and its sensitivity to warming depend on egg size in corals." Preprint, https://doi.org/10.21203/rs.3.rs-5298759/v1.
Ruiz‐Moreno, Alfonso, Emslie, Michael J., and Connolly, Sean R. 2024. "High response diversity and conspecific density‐dependence, not species interactions, drive dynamics of coral reef fish communities." Ecology Letters, 27, (4). https://doi.org/10.1111/ele.14424.
Álvarez-Noriega, Mariana, Madin, Joshua S., Baird, Andrew H., Dornelas, Maria, and Connolly, Sean R. 2023. "Disturbance-Induced Changes in Population Size Structure Promote Coral Biodiversity." American Naturalist, https://doi.org/10.1086/726738.
Madin, Joshua S., Baird, Andrew H., Connolly, Sean R., Dornelas, Maria A., Álvarez‐Noriega, Mariana, McWilliam, Michael J., Barbosa, Miguel, Blowes, Shane A., Cetina‐Heredia, Paulina, Christie, Alec P., Cumbo, Vivian R., Diaz, Marcela, Emms, Madeleine A., Graham, Erin, Hansen, Dominique, Hisano, Mizue, Howells, Emily, Kuo, Chao‐Yang, Palmer, Caroline, Hong, James Tan Chun, Zhi En Teo, Theophilus, and Woods, Rachael M. 2023. "Six years of demography data for 11 reef coral species." Ecology, 104, (5). https://doi.org/10.1002/ecy.4017.
Tebbett, Sterling B., Bellwood, David R., and Connolly, Sean R. 2023. "Benthic composition changes on coral reefs at global scales." Nature Ecology & Evolution, 7, (1) 71–81. https://doi.org/10.1038/s41559-022-01937-2.
Zamborain-Mason, Jessica, Cinner, Joshua E., MacNeil, M. Aaron, Graham, Nicholas A. J., Hoey, Andrew S., Beger, Maria, Brooks, Andrew J., Booth, David J., Edgar, Graham J., Feary, David A., Ferse, Sebastian C. A., Friedlander, Alan M., Gough, Charlotte L. A., Green, Alison L., Mouillot, David, Polunin, Nicholas V. C., Stuart-Smith, Rick D., Wantiez, Laurent, Williams, Ivor D., Wilson, Shaun K., and Connolly, Sean R. 2023. "Sustainable reference points for multispecies coral reef fisheries." Nature Communications, 14, (5368) 1–15. https://doi.org/10.1038/s41467-023-41040-z.
Dietzel, Andreas, Bode, Michael, Connolly, Sean R., and Hughes, Terry P. 2022. "Reply to: Conclusions of low extinction risk for most species of reef-building corals are premature." Nature Ecology & Evolution, https://doi.org/10.1038/s41559-022-01660-y.
McWilliam, Mike, Dornelas, Maria, Álvarez-Noriega, Mariana, Baird, Andrew H., Connolly, Sean R., and Madin, Joshua S. 2022. "Net effects of life-history traits explain persistent differences in abundance among similar species." Ecology, https://doi.org/10.1002/ecy.3863.
Tsai, Cheng-Han, Sweatman, Hugh P. A., Thibaut, Loic M., and Connolly, Sean R. 2022. "Volatility in coral cover erodes niche structure, but not diversity, in reef fish assemblages." Science Advances, 8, (24). https://doi.org/10.1126/sciadv.abm6858.
Turschwell, Mischa P., Connolly, Sean R., Schaefer, Ralf B., De Laender, Frederik, Campbell, Max D., Mantyka-Pringle, Chrystal, Jackson, Michelle C., Kattwinkel, Mira, Sievers, Michael, Ashauer, Roman, Cote, Isabelle M., Connolly, Rod M., van den Brink, Paul J., and Brown, Christopher J. 2022. "Interactive effects of multiple stressors vary with consumer interactions, stressor dynamics and magnitude." Ecology Letters, https://doi.org/10.1111/ele.14013.
Baird, Andrew H., Guest, James R., Edwards, Alasdair J., Bauman, Andrew G., Bouwmeester, Jessica, Mera, Hanaka, Abrego, David, Alvarez-Noriega, Mariana, Babcock, Russel C., Barbosa, Miguel B., Bonito, Victor, Burt, John, Cabaitan, Patrick C., Chang, Ching-Fong, Chavanich, Suchana, Chen, Chaolun A., Chen, Chieh-Jhen, Chen, Wei-Jen, Chung, Fung-Chen, Connolly, Sean R., Cumbo, Vivian R., Dornelas, Maria, Doropoulos, Christopher, Eyal, Gal, Eyal-Shaham, Lee et al. 2021. "An Indo-Pacific coral spawning database." Scientific Data, 8, (1). https://doi.org/10.1038/s41597-020-00793-8.
Figueiredo, Joana, Thomas, Christopher J., Deleersnijder, Eric, Lambrechts, Jonathan, Baird, Andrew H., Connolly, Sean R., and Hanert, Emmanuel. 2021. "Global warming decreases connectivity among coral populations." Nature Climate Change, https://doi.org/10.1038/s41558-021-01248-7.
Thomas, Christopher J., Figueiredo, Joana, Deleersnijder, Eric, Lambrechts, Jonathan, Baird, Andrew H., Connolly, Sean R., and Hanert, Emmanuel. 2021. [Dataset] Connectivity Matrices from biophysical modelling studies for A. millepora coral larvae in the Great Barrier Reef (Australia); present day and future scenarios. Distributed by Dryad. https://doi.org/10.5061/DRYAD.4F4QRFJBK.
Hughes, Terry P., Kerry, James T., Álvarez-Romero, Jorge G., Connolly, Sean R., Heron, Scott F., Gonzalez, Migdonio A., Moneghetti, Joanne, and Eakin, C. M. 2021. "Emergent properties in the responses of tropical corals to recurrent climate extremes." Current Biology, https://doi.org/10.1016/j.cub.2021.10.046.
Dietzel, Andreas, Bode, Michael, Connolly, Sean R., and Hughes, Terry P. 2021. "The population sizes and global extinction risk of reef-building coral species at biogeographic scales." Nature Ecology & Evolution, https://doi.org/10.1038/s41559-021-01393-4.
Dietzel, Andreas, Connolly, Sean R., Hughes, Terry P., and Bode, Michael. 2021. "The spatial footprint and patchiness of large-scale disturbances on coral reefs." Global Change Biology, https://doi.org/10.1111/gcb.15805.
Kline, David, I., Dehgan, Alex, Bunje, Paul, Selbe, Shah, Chirayath, Ved, Pizarro, Oscar, Leray, Matthieu, Connolly, Sean, Bongaert, Pim, Treibitz, Tali, Levy, Oren, Kriegman, David, Andersson, Andreas, McField, Melanie D., and Duffy, J. Emmett. 2021. "The Coral Reef Sentinels Program: A Mars Shot for Blue Planetary Health." Marine Technology Society Journal, 55, (3) 118–118. https://doi.org/10.4031/MTSJ.55.3.51.
Leray, Matthieu, Wilkins, Laetitia G. E., Apprill, Amy, Bik, Holly M., Clever, Friederike, Connolly, Sean R., De Leon, Marina E., Duffy, J. Emmett, Ezzat, Leila, Gignoux-Wolfsohn, Sarah, Herre, Edward Allen, Kaye, Jonathan Z., Kline, David I., Kueneman, Jordan G., McCormick, Melissa K., McMillan, W. Owen, O'Dea, Aaron, Pereira, Tiago J., Petersen, Jillian M., Petticord, Daniel F., Torchin, Mark E., Vega Thurber, Rebecca, Videvall, Elin, Wcislo, William T., Yuen, Benedict et al. 2021. "Natural experiments and long-term monitoring are critical to understand and predict marine host-microbe ecology and evolution." Plos Biology, 19, (8). https://doi.org/10.1371/journal.pbio.3001322.
Bairos-Novak, Kevin R., Hoogenboom, Mia O., van Oppen, Madeleine J. H., and Connolly, Sean R. 2021. "Coral adaptation to climate change: Meta-analysis reveals high heritability across multiple traits." Global Change Biology, https://doi.org/10.1111/gcb.15829.
Dietzel, Andreas, Bode, Michael, Connolly, Sean R., and Hughes, Terry P. 2020. "Long-term shifts in the colony size structure of coral populations along the Great Barrier Reef." Proceedings of the Royal Society B: Biological Sciences, 287, (1936). https://doi.org/10.1098/rspb.2020.1432.
Crandall, Eric D., Riginos, Cynthia, Bird, Chris E., Liggins, Libby, Treml, Eric, Beger, Maria, Barber, Paul H., Connolly, Sean R., Cowman, Peter F., DiBattista, Joseph D., Eble, Jeff A., Magnuson, Sharon F., Horne, John B., Kochzius, Marc, Lessios, Harilaos A., Liu, Shang Yin Vanson, Ludt, William B., Madduppa, Hawis, Pandolfi, John M., Toonen, Robert J., Gaither, Michelle R., and Diversity Indopacific Network. 2019. "The molecular biogeography of the Indo-Pacific: Testing hypotheses with multispecies genetic patterns." Global Ecology and Biogeography, 28, (7) 943–960. https://doi.org/10.1111/geb.12905.
Casey, Jordan M., Baird, Andrew H., Brandl, Simon J., Hoogenboom, Mia O., Rizzari, Justin R., Frisch, Ashley J., Mirbach, Christopher E., and Connolly, Sean R. 2017. "A test of trophic cascade theory: fish and benthic assemblages across a predator density gradient on coral reefs." Oecologia, 183, (1) 161–175. https://doi.org/10.1007/s00442-016-3753-8.
Madin, Joshua S., Anderson, Kristen D., Andreasen, Magnus Heide, Bridge, Tom C. L., Cairns, Stephen D., Connolly, Sean R., Darling, Emily S., Diaz, Marcela, Falster, Daniel S., Franklin, Erik C., Gates, Ruth D., Hoogenboom, Mia O., Huang, Danwei, Keith, Sally A., Kosnik, Matthew A., Kuo, Chao-Yang, Lough, Janice M., Lovelock, Catherine E., Luiz, Osmar, Martinelli, Julieta, Mizerek, Toni, Pandolfi, John M., Pochon, Xavier, Pratchett, Morgan S., Putnam, Hollie M. et al. 2016. "The Coral Trait Database, a curated database of trait information for coral species from the global oceans." Scientific Data, 3 1–21. https://doi.org/10.1038/sdata.2016.17.
Connolly, Sean R., MacNeil, M. Aaron, Caley, M. Julian, Knowlton, Nancy, Cripps, Ed, Hisano, Mizue, Thibaut, Loic M., Bhattacharya, Bhaskar D., Benedetti-Cecchi, Lisandro, Brainard, Russell E., Brandt, Angelika, Bulleri, Fabio, Ellingsen, Kari E., Kaiser, Stefanie, Kroncke, Ingrid, Linse, Katrin, Maggi, Elena, O'Hara, Timothy D., Plaisance, Laetitia, Poore, Gary C. B., Sarkar, Santosh K., Satpathy, Kamala K., Schuckel, Ulrike, Williams, Alan, and Wilson, Robin S. 2014. "Commonness and rarity in the marine biosphere." Proceedings of the National Academy of Sciences of the United States of America, 111, (23) 8524–8529. https://doi.org/10.1073/pnas.1406664111.
Gotelli, Nicholas J., Anderson, Marti J., Arita, Hector T., Chao, Anne, Colwell, Robert K., Connolly, Sean R., Currie, David J., Dunn, Robert R., Graves, Gary R., Green, Jessica L., Grytnes, John-Arvid, Jiang, Yi-Huei, Jetz, Walter, Lyons, Sara K., McCain, Christy M., Magurran, Anne E., Rahbek, Carsten, Rangel, Thiago F. L. V. B., Soberón, Jorge, Webb, Campbell O., and Willig, Michael R. 2009. "Patterns and causes of species richness: a general simulation model for macroecology." Ecology Letters, 12, (9) 873–886. https://doi.org/10.1111/j.1461-0248.2009.01353.x.
Robbins, William D., Hisano, Mizue, Connolly, Sean R., and Choat, J. H. 2006. "Ongoing collapse of coral-reef shark populations." Current Biology, 16, (23) 2314–2319. https://doi.org/10.1016/j.cub.2006.09.044.
Aronson, Richard B., Bruno, John F., Precht, William F., Glynn, Peter William, Harvell, C. Drew, Kaufman, Les, Rogers, Caroline S., Shinn, Eugene A., Valentine, John F., Pandolfi, John M., Bradbury, Roger H., Sala, Enric, Hughes, Terence P., Bjorndal, Karen A., Cooke, Richard G., McArdle, Deborah, Mcclenachan, Loren, Newman, Marah J. H., Paredes, Gustavo, Warner, Robert R., Jackson, Jeremy B. C., Baird, A. H., Bellwood, D. R., Connolly, S. R., Folke, C. et al. 2003. "Causes of Coral Reef Degradation." Science, (5650) 1502b–1504.
Hugues, Ted P., Baird, H., Bellwood, D. R., Card, M., Connolly, S. R., Folke, C., Grosberg, R., Hoegh-Guldberg, O., Jackson, Jeremy B. C., Kleypas, J., Lough, J. M., Marshall, P., Nystro, M., Palumbi, Stephen R., Pandolfi, John M., Rosen, B., and Roughgarden, J. 2003. "Climate Change, Human Impacts, and the Resilience of Coral Reefs." Science, 301, (5634) 929–933.
