Bibliography
Edward Allen Herre
Delavaux, Camille S., Angst, Janika K., Espinosa, Hilario, Brown, Makenna, Petticord, Daniel F., Schroeder, John W., Broders, Kirk, Herre, Edward A., Bever, James D., and Crowther, Thomas W. 2023. "Fungal community dissimilarity predicts plant–soil feedback strength in a lowland tropical forest." Ecology, https://doi.org/10.1002/ecy.4200.
Oldenbeuving, Aafke, Gómez-Zúniga, Adalberto, Florez-Buitrago, Ximena, Gutiérrez-Zuluaga, Ana M., Machado, Carlos A., Van Dooren, Tom J. M., van Alphen, Jacques, Biesmeijer, Jacobus C., and Herre, Edward Allen. 2023. "Field sampling of fig pollinator wasps across host species and host developmental phase: Implications for host recognition and specificity." Ecology and Evolution, 13, (9). https://doi.org/10.1002/ece3.10501.
Satler, Jordan D., Herre, Edward Allen, Heath, Tracy A., Machado, Carlos A., Gómez Zúñiga, Adalberto, Jandér, K. Charlotte, Eaton, Deren A. R., and Nason, John D. 2023. "Pollinator and host sharing lead to hybridization and introgression in Panamanian free-standing figs, but not in their pollinator wasps." Ecology and Evolution, 13, (1). https://doi.org/10.1002/ece3.9673.
Satler, Jordan D., Herre, Edward Allen, Heath, Tracy A., Machado, Carlos A., Zuniga, Adalberto Gomez, and Nason, John D. 2022. "Genome-wide sequence data show no evidence of hybridization and introgression among pollinator wasps associated with a community of Panamanian strangler figs." Molecular ecology, https://doi.org/10.1111/mec.16373.
Van Goor, Justin, Herre, Edward Allen, Gomez, Adalberto, and Nason, John D. 2022. "Extraordinarily precise nematode sex ratios: adaptive responses to vanishingly rare mating opportunities." Proceedings of the Royal Society B: Biological Sciences, 289, (1967). https://doi.org/10.1098/rspb.2021.1572.
Satler, Jordan D., Herre, Edward Allen, Heath, Tracy A., Machado, Carlos A., Zuniga, Adalberto Gomez, and Nason, John D. 2022. [Dataset] Genome-wide sequence data show no evidence of hybridization and introgression among pollinator wasps associated with a community of Panamanian strangler figs. Distributed by Dryad. https://doi.org/10.5061/DRYAD.FBG79CNWK.
Leray, Matthieu, Wilkins, Laetitia G. E., Apprill, Amy, Bik, Holly M., Clever, Friederike, Connolly, Sean R., De Leon, Marina E., Duffy, J. Emmett, Ezzat, Leila, Gignoux-Wolfsohn, Sarah, Herre, Edward Allen, Kaye, Jonathan Z., Kline, David I., Kueneman, Jordan G., McCormick, Melissa K., McMillan, W. Owen, O'Dea, Aaron, Pereira, Tiago J., Petersen, Jillian M., Petticord, Daniel F., Torchin, Mark E., Vega Thurber, Rebecca, Videvall, Elin, Wcislo, William T., Yuen, Benedict et al. 2021. "Natural experiments and long-term monitoring are critical to understand and predict marine host-microbe ecology and evolution." Plos Biology, 19, (8). https://doi.org/10.1371/journal.pbio.3001322.
Zhang, Ting, Jander, K. Charlotte, Huang, Jian-Feng, Zhao, Jiang-Bo, Miao, Bai-Ge, Peng, Yan-Qiong, Wang, Bo, and Herre, Edward Allen. 2021. "The evolution of parasitism from mutualism in wasps pollinating the fig, Ficus microcarpa, in Yunnan Province, China." Proceedings of the National Academy of Sciences of the United States of America, 118, (32). https://doi.org/10.1073/pnas.2021148118.
Wang, Gang, Zhang, Xingtan, Herre, Edward Allen, McKey, Doyle, Machado, Carlos A., Yu, Wen-Bin, Cannon, Charles H., Arnold, Michael L., Pereira, Rodrigo A. S., Ming, Ray, Liu, Yi-Fei, Wang, Yibin, Ma, Dongna, and Chen, Jin. 2021. "Genomic evidence of prevalent hybridization throughout the evolutionary history of the fig-wasp pollination mutualism." Nature Communications, 12 Article 718. https://doi.org/10.1038/s41467-021-20957-3.
Christian, Natalie, Sedio, Brian E., Florez-Buitrago, Ximena, Ramírez-Camejo, Luis A., Rojas, Enith I., Mejía, Luis C., Palmedo, Sage, Rose, Autumn, Schroeder, John W., and Herre, Edward Allen. 2020. "Host affinity of endophytic fungi and the potential for reciprocal interactions involving host secondary chemistry." American Journal of Botany, 107, (2) 219–228. https://doi.org/10.1002/ajb2.1436.
Pellmyr, Olle, Kjellberg, Finn, Herre, Edward Allen, Kawakita, Atsushi, Hembry, David H., Holland, J. N., Terrazas, Teresa, Clement, Wendy, Segraves, Kari A., and Althoff, David M. 2020. "Active pollination drives selection for reduced pollen-ovule ratios." American Journal of Botany, 107, (1) 164–170. https://doi.org/10.1002/ajb2.1412.
Schroeder, John W., Dobson, Andrew, Mangan, Scott A., Petticord, Daniel F., and Herre, Edward Allen. 2020. "Mutualist and pathogen traits interact to affect plant community structure in a spatially explicit model." Nature Communications, 11, (1) 1–10. https://doi.org/10.1038/s41467-020-16047-5.
Christian, Natalie, Herre, Edward Allen, and Clay, Keith. 2019. "Foliar endophytic fungi alter patterns of nitrogen uptake and distribution in Theobroma cacao." New Phytologist, 1–28. https://doi.org/10.1111/nph.15693.
Esser, Helen J., Herre, Edward Allen, Kays, Roland, Liefting, Yorick, and Jansen, Patrick A. 2019. "Local host-tick coextinction in neotropical forest fragments." International journal for parasitology, 1–9. https://doi.org/10.1016/j.ijpara.2018.08.008.
Satler, Jordan D., Herre, Edward Allen, Jandér, K. Charlotte, Eaton, Deren A. R., Machado, Carlos A., Heath, Tracy A., and Nason, John D. 2019. "Inferring Processes of Coevolutionary Diversification in a Community of Panamanian Strangler Figs and Associated Pollinating Wasps." Evolution, 73, (11) 2295–2311. https://doi.org/10.1111/evo.13809.
Walker, Laura M., Cedeño‐Sanchez, Marjorie, Carbonero, Frank G., Herre, Edward Allen, Turner, Benjamin L., Wright, S. Joseph, and Stephenson, Steven L. 2019. "The Response of Litter-Associated Myxomycetes to Long-Term Nutrient Addition in a Lowland Tropical Forest." Journal of Eukaryotic Microbiology, 1–29. https://doi.org/10.1111/jeu.12724.
Wilkins, Laetitia G. E., Leray, Matthieu, O'Dea, Aaron, Yuen, Benedict, Peixoto, Raquel S., Pereira, Tiago J., Bik, Holly M., Coil, David A., Duffy, J. Emmett, Herre, Edward Allen, Lessios, Harilaos A., Lucey, Noelle M., Mejia, Luis C., Rasher, Douglas B., Sharp, Koty H., Sogin, Emilia M., Thacker, Robert W., Thurber, Rebecca Vega, Wcislo, William T., Wilbanks, Elizabeth G., and Eisen, Jonathan A. 2019. "Host-associated microbiomes drive structure and function of marine ecosystems." PLoS biology, 17, (11) 1–15. https://doi.org/10.1371/journal.pbio.3000533.
Wilkins, Laetitia G. E., Leray, Matthieu, Yuen, Benedict, Peixoto, Raquel, Pereira, Tiago J., Bik, Holly M., Coil, David A., Duffy, J. Emmett, Herre, Edward Allen, Lessios, Harilaos, Lucey, Noelle, Mejia, Luis C., O'Dea, Aaron, Rasher, Douglas B., Sharp, Koty, Sogin, Emilia M., Thacker, Robert W., Thurber, Rebecca Vega, Wcislo, William T., Wilbanks, Elizabeth G., and Eisen, Jonathan A. 2019. "Host-associated microbiomes and their roles in marine ecosystem functions." PeerJ, 1–27. https://doi.org/10.7287/peerj.preprints.27930v1.
Center, Barbara, Kanzaki, Natsumi, Esquivel, Alejandro, Giblin-Davis, Robin, Davies, Kerrie A., Ye, Weimin, Bartholomaeus, Faerlie, and Herre, Edward Allen. 2017. "Two new species and three morphospecies of Ficophagus Davies & Bartholomaeus, 2015 (Nematoda: Aphelenchoididae) from Ficus subgenus Pharmacosycea (Moraceae) in Central America." Nematology, 19, (3) 351–374. https://doi.org/10.1163/15685411-00003055.
Christian, Natalie, Herre, Edward Allen, Mejia, Luis C., and Clay, Keith. 2017. "Exposure to the leaf litter microbiome of healthy adults protects seedlings from pathogen damage." Proceedings of the Royal Society B: Biological Sciences, 284, (1858). https://doi.org/10.1098/rspb.2017.0641.
Davies, Kerrie A., Ye, Weimin, Kanzaki, Natsumi, Center, Barbara, Bartholomaeus, Faerlie W., Esquivel, Alejandro, Giblin-Davis, Robin M., and Herre, Edward Allen. 2017. "Four new species and five morphospecies of Ficophagus Davies & Bartholomaeus, 2015 (Nematoda: Aphelenchoididae) from Ficus subgenus Urostigma sect. Americana (Moraceae) in Central America." Nematology, 19, (4) 427–461. https://doi.org/10.1163/15685411-00003059.
Jander, K. C., Dafoe, A., and Herre, Edward Allen. 2017. [Dataset] Appdendix S1: Fitness reduction for uncooperative fig wasps through reduced offspring size: a third component of host sanctions. Distributed by Panama: Smithsonian Tropical Research Institute. https://doi.org/10.5479/data_stri/10088/31945.
Esser, Helen J., Foley, Janet E., Bongers, Frans, Herre, Edward Allen, Miller, Matthew J., Prins, Herbert H. T., and Jansen, Patrick A. 2016. "Host body size and the diversity of tick assemblages on Neotropical vertebrates." International Journal for Parasitology: Parasites and Wildlife, 5, (3) 295–304. https://doi.org/10.1016/j.ijppaw.2016.10.001.
Esser, Helen J., Herre, Edward Allen, Blüthgen, Nico, Loaiza, Jose R., Bermúdez, Sergio E., and Jansen, Patrick A. 2016. "Host specificity in a diverse Neotropical tick community: an assessment using quantitative network analysis and host phylogeny." Parasites & Vectors, 9 372. https://doi.org/10.1186/s13071-016-1655-6.
Fister, Andrew S., Mejia, Luis C., Zhang, Yufan, Herre, Edward Allen, Maximova, Siela N., and Guiltinan, Mark J. 2016. "Erratum to: Theobroma cacao L. pathogenesis-related gene tandem array members show diverse expression dynamics in response to pathogen colonization." BMC Genomics, 17 715. https://doi.org/10.1186/s12864-016-3073-8.
Fister, Andrew S., Mejia, Luis C., Zhang, Yufan, Herre, Edward Allen, Maximova, Siela N., and Guiltinan, Mark J. 2016. "Theobroma cacao L. pathogenesis-related gene tandem array members show diverse expression dynamics in response to pathogen colonization." BMC Genomics, 17 363. https://doi.org/10.1186/s12864-016-2693-3.
Jandér, K. Charlotte, Dafoe, A., and Herre, Edward Allen. 2016. "Fitness reduction for uncooperative fig wasps through reduced offspring size: a third component of host sanctions." Ecology, 97, (9) 2491–2500. https://doi.org/10.1002/ecy.1471.
Jandér, K. Charlotte and Herre, Edward Allen. 2016. "Host sanctions in Panamanian Ficus are likely based on selective resource allocation." American Journal of Botany, 103, (10) 1753–1762. https://doi.org/10.3732/ajb.1600082.
Kanzaki, Natsumi, Giblin-Davis, Robin, Ye, Weimin, Herre, Edward Allen, and Center, Barbara J. 2016. "Recharacterisation of three Parasitodiplogaster species based on morphological and molecular profiles." Nematology, 18, (4) 417–437. https://doi.org/10.1163/15685411-00002967.
Miller, Matthew J., Esser, Helen J., Loaiza, Jose R., Herre, Edward Allen, Aguilar, Celestino, Quintero, Diomedes, Álvarez, Eric A., and Bermingham, Eldredge. 2016. "Molecular Ecological Insights into Neotropical Bird–Tick Interactions." PLOS ONE, 11, (5) 1–17. https://doi.org/10.1371/journal.pone.0155989.
Heer, Katrin, Kalko, Elisabeth K. V., Albrecht, Larissa, García-Villacorta, Roosevelt, Staeps, Felix C., Herre, Edward Allen, and Dick, Christopher W. 2015. "Spatial Scales of Genetic Structure in Free-Standing and Strangler Figs (Ficus, Moraceae) Inhabiting Neotropical Forests." PloS One, 10, (7) 1–18. https://doi.org/10.1371/journal.pone.0133581.
Martinson, Ellen O., Jandér, K. Charlotte, Peng, Yan-Qiong, Chen, Huan-Huan, Machado, Carlos A., Arnold, Anne Elizabeth, and Herre, Edward Allen. 2014. "Relative investment in egg load and poison sac in fig wasps: Implications for physiological mechanisms underlying seed and wasp production in figs." Acta Oecologica, 57 58–66. https://doi.org/10.1016/j.actao.2013.07.009.
Mejía, Luis C., Herre, Edward Allen, Sparks, Jed P., Winter, Klaus, Garcia, Milton N., Van Bael, Sunshine A., Stitt, Joseph, Shi, Zi, Zhang, Yufan, Guiltinan, Mark J., and Maximova, Siela N. 2014. "Pervasive effects of a dominant foliar endophytic fungus on host genetic and phenotypic expression in a tropical tree." Frontiers in Microbiology, 5. https://doi.org/10.3389/fmicb.2014.00479.
Heer, Katrin, Machado, Carlos A., Himler, Anna G., Herre, Edward Allen, Kalko, Elisabeth Klara Viktoria, and Dick, Christopher W. 2012. "Anonymous and EST-based microsatellite DNA markers that transfer broadly across the fig tree genus (Ficus, Moraceae)." American Journal of Botany, 99, (8) 330–333. https://doi.org/10.3732/ajb.1200032.
Jandér, K. Charlotte, Herre, Edward Allen, and Simms, Ellen L. 2012. "Precision of host sanctions in the fig tree–fig wasp mutualism: consequences for uncooperative symbionts." Ecology Letters, 15, (12) 1362–1369. https://doi.org/10.1111/j.1461-0248.2012.01857.x.
Kanzaki, Natsumi, Giblin-Davis, Robin M., Scheffrahn, Rudolf H., Taki, Hisatomo, Esquivel, Alejandro, Davies, Kerrie A., and Herre, Edward Allen. 2012. "Reverse Taxonomy for Elucidating Diversity of Insect-Associated Nematodes: A Case Study with Termites." Plos One, 7, (8) e43865. https://doi.org/10.1371/journal.pone.0043865.
Martinson, Ellen O., Herre, Edward Allen, Machado, Carlos A., and Arnold, Anne Elizabeth. 2012. "Culture-Free Survey Reveals Diverse and Distinctive Fungal Communities Associated with Developing Figs (Ficus spp.) in Panama." Microbial Ecology, 64, (4) 1073–1084. https://doi.org/10.1007/s00248-012-0079-x.
Herre, Edward Allen, Shuker, David M., and West, Stuart A. 2011. "Social Evolution: Evolving Sex Ratios." Current Biology, 21, (24) R992–R994. https://doi.org/10.1016/j.cub.2011.10.047.
Herre, Edward Allen and Wcislo, William T. 2011. "In defence of inclusive fitness theory." Nature, 471, (7339) E8–E9. https://doi.org/10.1038/nature09835.
Jones, F. Andrew, Erickson, David L., Bernal, Moises A., Bermingham, Eldredge, Kress, W. John, Herre, Edward Allen, Muller-Landau, Helene C., and Turner, Benjamin L. 2011. "The Roots of Diversity: Below Ground Species Richness and Rooting Distributions in a Tropical Forest Revealed by DNA Barcodes and Inverse Modeling." PLoS ONE, 6, (9) 1–10. https://doi.org/10.1371/journal.pone.0024506.
Kiers, E. Toby, Denison, R. Ford, Kawakita, Atsushi, and Herre, Edward Allen. 2011. "The biological reality of host sanctions and partner fidelity." Proceedings of the National Academy of Sciences of the United States of America, 108, (3) E7–E7. https://doi.org/10.1073/pnas.1014546108.
Pizano, Camila, Mangan, Scott A., Herre, Edward Allen, Eom, Ahn-Heum, and Dalling, James W. 2011. "Above- and belowground interactions drive habitat segregation between two cryptic species of tropical trees." Ecology, 92, (1) 47–56. https://doi.org/10.1890/09-1715.1.
Giblin-Davis, Robin M., Kanzaki, Natsumi, Esquivel, A., Davies, K. A., Herre, Edward Allen, Center, B. J., and Scheffrahn, R. H. 2010. "First Report of Pinworms from Termite Hindguts from Central America." Journal of Nematology, 42, (3) 243–243.
Jander, K. C. and Herre, Edward Allen. 2010. "Host sanctions and pollinator cheating in the fig tree-fig wasp mutualism." Proceedings of the Royal Society B: Biological Sciences, 277, (1687) 1481–1488. https://doi.org/10.1098/rspb.2009.2157.
Kanzaki, Natsumi, Giblin-Davis, Robin M., Herre, Edward Allen, Scheffrahn, Rudolf H., and Center, Barbara J. 2010. "Pseudaphelenchus Vindai n. sp (Tylenchomorpha: Aphelenchoididae) associated with termites (Termitidae) in Barro Colorado Island, Panama." Nematology, 12, (6) 905–914. https://doi.org/10.1163/138855410X496187.
Kanzaki, Natsumi, Giblin-Davis, Robin, Herre, Edward Allen, and Center, Barbara J. 2010. "Redescription of two Panamanian nematodes, Parasitodiplogaster citrinema Poinar & Herre, 1991 and P. popenema Poinar & Herre, 1991 (Nematoda: Diplogastrina)." Nematology, 12, (1) 89–104. https://doi.org/10.1163/156854109X448366.
Mangan, Scott A., Herre, Edward Allen, and Bever, James D. 2010. "Specificity between Neotropical tree seedlings and their fungal mutualists leads to plant-soil feedback." Ecology, 91, (9) 2594–2603. https://doi.org/10.1890/09-0396.1.
Mangan, Scott A., Schnitzer, Stefan A., Herre, Edward Allen, Mack, Keenan M. L., Valencia, Mariana C., Sanchez, Evelyn I., and Bever, James D. 2010. "Negative plant-soil feedback predicts tree-species relative abundance in a tropical forest." Nature, 466, (7307) 752–755. https://doi.org/10.1038/nature09273.
Rojas, Enith I., Rehner, Stephen A., Samuels, Gary J., Van Bael, Sunshine A., Herre, Edward Allen, Cannon, Paul F., Chen, Rui, Pang, Junfeng, Wang, Rui-Wu, Zhang, Yaping, Peng, Yan-Qiong, and Sha, Tao. 2010. "Colletotrichum gloeosporioides s.l. associated with Theobroma cacao and other plants in Panama: multilocus phylogenies distinguish host-associated pathogens from asymptomatic endophytes." Mycologia, 102, (6) 1318–1338. https://doi.org/10.3852/09-244.
Van Bael, Sunshine A., Fernández-Marín, Hermógenes, Valencia, Mariana C., Rojas, Enith I., Wcislo, William T., and Herre, Edward Allen. 2009. "Two fungal symbioses collide: endophytic fungi are not welcome in leaf-cutting ant gardens." Proceedings of the Royal Society B: Biological Sciences, 276, (1666) 2419–2426. https://doi.org/10.1098/rspb.2009.0196.
